Entering edit mode
3.0 years ago
HaroonPakistan
•
0
Hi,
I have downloaded the SRA data by using the prefetch command and it worked very well. Now, the next turn was to convert the SRA file to Fastq format. I used this command (fast-dump SRR10914109). It converted the SRA file into a Fastq file but not completely. I mean it just downloaded half portion of the whole SRA file into Fastq format.
This message appeared on-screen
fastq-dump.2.9.6 err: process canceled while executing process - failed SRR10914109.sra
I am trying different commands like fasterq-dump but the problem still persists. Its requested you, please inform me
Looks like you did everything right but not sure what the issue is.
Do yourself a favor and just grab the fastq files directly from EBI-ENA (Large file download -->. SRR10914109)