This is a test version of Biostars. For the public version, visit https://www.biostars.org.
MSI cslculation

Dear Biostars Community,

I'm currently working on a project that requires calculation of microsatellite instability using NGS.

I'm wondering if there is a way (or tool) to calculate msi using a tumor-sample-only annotation json with its coverage bed?

Many thanks

bed sequencing annotation

I would say you still need a BAM file with the alignment.

0 answers

No answers yet.

Log in to answer this question.