Entering edit mode
3.1 years ago
berk.gonenc
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0
Dear Biostars Community,
I'm currently working on a project that requires calculation of microsatellite instability using NGS.
I'm wondering if there is a way (or tool) to calculate msi using a tumor-sample-only annotation json with its coverage bed?
Many thanks
I would say you still need a BAM file with the alignment.