How To Get Sequences Of Rna-Seq Transcripts Isoforms From Tcga ?
Give you have UCSC IDs of transcript isoforms of genes from TCGA. The goal is to find the sequences of this isoforms. Does anybody know webserver/software which fit into this scenario?
example of IDs:
uc001jiu.2
uc002bgz.2
uc002bic.2
uc010qhg.1
uc010unu.1
uc010uoa.1
uc010zzl.1
uc011krn.1
uc011lsn.1
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This is quite easy to do using either the UCSC website or BioMart. However: as I commented on your previous question - How to map isoform IDs of transcript to Entrez IDs ? - none of those IDs are valid, when pasted into the UCSC Table Browser. You should figure out why before continuing.