I have a set of assembled contigs (genomic sequences). These contigs were assembled using a de novo short read assembler . I map/align the original …

Hi! I have a nanopore genome assembly and I have aligned my illumina genomic contigs to it. I want to know what is the best …

Hi, I have a set of nucleotide sequences that overlap, and connect them often using a feature implemented in Sequencher that is found at http://bioinformatics.uthsc.edu/classes/module9/sequencher3.html …

Hi I have a single fasta file that contains just over 70,000 individual sequences from a non-model organism (no genome available). I would like to …

Hello I am in need of some help again. I have a set of contigs (in a multifasta file), and I need to align them …

I have a few contigs and I need to compare them with a known protein of a species. I dropped the contigs in BlastX and …

<p>Is there any tool to automatically clip the flanking sub-sequences of contigs (beginning and end of each contig) that overlap with other contigs? Is there …

<p>Hi everyone, I tried to align one of my reference genes with its contigs using Mauve, MAFFT, emboss needle etc, but could not get it …

<p>i have a fasta file with 113 contigs and a reference sequence in fasta file. i have to align my contigs to the reference sequence …

<p>Hi Guys,</p> <p>Does anyone have experienced the search of microsatellite motifs in high-throughput sequencing data, such as contigs built from the assembly of 454 data? …