Replacing reference with aligned reads · Biostar

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Replacing reference with aligned reads

Hi! I have a nanopore genome assembly and I have aligned my illumina genomic contigs to it. I want to know what is the best program that I can use to REPLACE the nanopore assembly sequences with the corresponding illumina genomic contigs aligned to that part of the assembly. Is it just Pilon or there is something a bit faster out there? Thanks!

alignment correction

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updated 6.7 years ago by Biostar

• written 7.5 years ago by elena.syp •

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