Any alternative to Sequencher's assembling sequence method or Dirty Data for connecting cascading sequences

Hi,

I have a set of nucleotide sequences that overlap, and connect them often using a feature implemented in Sequencher that is found at http://bioinformatics.uthsc.edu/classes/module9/sequencher3.html

However, I wonder if there are alternatives to that or any free tools.

Thank you,
SangChul

assembly alignment

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updated 4.1 years ago by Ram

• written 10.4 years ago by Sang Chul Choi •

Many of programs in BBMap suite accept fasta files (in addition to fastq). I am not sure if tadpole.sh would do what you are currently doing with Sequencher, but it may be worth a try. You could always convert your fasta into fake fastq files if tadpole will only take fastq.

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written 10.4 years ago by GenoMax

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