This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Error In Batch Mode Run Prodigle

Hi Everyone i am trying to run prodigal in batch mode for 50genome. I want after each run the two out put file name according to input file name. I am doing like this but its not renaming. Please help me out.

# Predicted gene
    for file in ./*.fasta
        do
        echo $file 
        ./prodigal.v2_60.linux -a out_trans -d out_nuc -i $file
         mv out_trans $file_trans
         mv out_nuc $file_nuc
        done

0 answers

No answers yet.

Log in to answer this question.