Error In Batch Mode Run Prodigle
Hi Everyone i am trying to run prodigal in batch mode for 50genome. I want after each run the two out put file name according to input file name. I am doing like this but its not renaming. Please help me out.
# Predicted gene
for file in ./*.fasta
do
echo $file
./prodigal.v2_60.linux -a out_trans -d out_nuc -i $file
mv out_trans $file_trans
mv out_nuc $file_nuc
done
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I've answered in another thread, should be
"$file"_transand"$file"_nucThank you so much.