I-Sites Library X Rotamer Library
Hi. I can consider the I-Sites library (See: http://www.bioinfo.rpi.edu/bystrc/pdf/Bystroff_98_jmb.pdf) is type of Rotamer Library ?
[]'s
protein-structure
library
• 343 views
•
link
written
by
alvieirajr •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Can Igv View Blast+ Output File?
written by shl198<p>Hi, I aligned short reads using blast+ and generated tabular file. I also have <a href='http://samtools.sourceforge.net/SAM1.pdf'>bam</a> files generated by aligners, and I can visualize the …
-
Selenocysteine In Pdb File
written by alvieirajr •<p>Hi!. Is normal replace the Selenocysteine (code: SEC, see) by a Alanine (ALA) ? </p> <p>To the <strong>1GP1</strong> Entry in the PDB databank I see …
-
Normalizing Bam Files
written by ChIP<p>Hi!</p> <p>I am back again with one more naive question. </p> <p>What according to you is the best way to Normalise a <a href='http://samtools.sourceforge.net/SAM1.pdf'>BAM</a> file …
-
Samtools View Of A Sam File Entire Chromosome
written by dfernan<p>Hi, </p> <p>I have (what I think) is a valid <a href='http://samtools.sourceforge.net/SAM1.pdf'>sam</a> file.</p> <p>When I do:</p> <pre><code>samtools view -S F1i1F.C57.2.Aligned.out.sam chr19_C57 </code></pre> <p>I get the …
-
Basic Paired-End Sam Questions
written by dlv •<p>I can't seem to find answers to 2 very basic questions.</p> <p>For a paired-end <a href='http://samtools.sourceforge.net/SAM1.pdf'>sam</a>, is there a separate <a href='http://samtools.sourceforge.net/SAM1.pdf'>sam</a> line for mate1's …
-
How To Fix A Bam-Readcount Sm Error: "Couldn'T Grab Single-End Mapping Quality For Read"
written by amnonim •<p>Hi I'm using <a href='http://samtools.sourceforge.net/SAM1.pdf'>bam</a>-readcount to get coverage per nucleotide as part of our exome-seq variant annotation pipeline, following <a href='http://bio-bwa.sourceforge.net/'>bwa</a> and gatk when i …
-
Chip-Seq Peak Calling Using Macs For Replicates In Galaxy
written by anon111 •<p>I'm new to Galaxy. I have Chip-seq data for two cell types. Each cell type has two replicates. I already ran an alignment workflow in …
-
In Bowtie2'S Sam Output, What Does The Yt Attribute Mean?
written by Eric Fournier<p>In Bowtie2's <a href='http://samtools.sourceforge.net/SAM1.pdf'>SAM</a> output, what does the YT flag mean? I can't seem to find a mention of it in Bowtie2's documentation, and the …
-
Bioscope With Cufflinks
written by Ramon Vidal •<p>Does any one here have ever used Bioscope with Cufflinks to do DE analysis? I am trying to use the <a href='http://samtools.sourceforge.net/SAM1.pdf'>BAM</a> files generated by …
-
Command-Line Tool For Swapping Amino Acid Side-Chain Rotamers
written by Keith Callenberg<p>Does anyone know of a command-line (non-GUI) tool like <a href="http://dunbrack.fccc.edu/scwrl4/">SCWRL</a> that will optimize the side-chains of a protein structure, but allow you to somehow …
Please be more specific, what do you mean by "type of", how is this relevant at all?
hi. thanks for reply. I want know if the i-sites library is a rotamer library type.