No, it isn't. "Mean value of SNP for each gene" - what values are being measured? "p-value for each SNP" - what exactly are you comparing and expecting to be different? "Assuming a poisson distribution" - of what?
Hi all. After performing a GWAS with the MLMM package (multi-locus mixed linear model, [paper1][1]) and obtaining a set of SNPs based significantly associated with …
We are using Illumina's Somatic Variant Caller (https://www.illumina.com/documents/products/technotes/technote_somatic_variant_caller.pdf) to call somatic variant from tumor sample. Based on the Somatic Variant Caller description, it used Poisson …
<p>Although R packages like "edgeR" "DEseq" have been frequently used for RNA-seq expression study, I am still confused that why RNA-seq read count fits Poisson …
R Data Analysis Examples: Poisson Regression
Please provide more detail of what you want to achieve.
I need to find p-value for each SNP assuming a poisson distribution.I need to know how to calculate the mean value of SNP for each gene.
This is not much more detail...
No, it isn't. "Mean value of SNP for each gene" - what values are being measured? "p-value for each SNP" - what exactly are you comparing and expecting to be different? "Assuming a poisson distribution" - of what?