Hi, I'm running into an issue when trying to obtain a KEGG Orthology Table from the KEGG webpage (http://www.genome.jp/kegg/annotation/). I have a list of K …

Hi every body, I am trying to visualize a VCF file (VCFannotation output from Galaxy) in IGV. It seems this file is properly imported, but …

<p>Hi all,</p> <p>I am trying to draw a network in cytoscape3. There are 1023 interactions in my network and as a result the network is …

<p>Here is what I am doing:</p> <pre> #GDS download and processing test source(&quot;http://bioconductor.org/biocLite.R&quot;) biocLite() library(GEOquery) gds &lt;- getGEO(&#39;GDS756&#39;) #Convert to ExpressionSet eset &lt;- GDS2eSet(gds,do.log2=TRUE)</pre> <p>eset …

<p>Hi all,</p> <p>I am trying to install PyMol on my laptop, but after installation whenever I try to open the program, only PyMol viewer is …

<p>Hi</p> <p>I turned off the firewall. This time the command <code>gds = getGEO('GDS2478')</code> resulted in the following error:</p> <pre><code>Using locally cached version of GDS2478 found …

<p>Hi Thanks for comments, but the problem has not been solved yet. When I type this command: gds = getGEO('GDS2478'), I get the following error:</p> …

<p>Hi all, I've just started to import gene expression data sets in R. When I try to import data using this command:</p> <pre><code>gds&lt;-getGEO(filename=system.file("extdata/GDS2478.soft.gz",package="GEOquery")) </code></pre> <p>I …

<p>Hi everyone:</p> <p>I just got some mirna data form the miRNA 2.0 array by affymetrix. My problem is that while working with the gcrma normalization …

<p>New to R/Bioconductor and all that so forgive my lack of R chops or understanding of objects like ExpressionSet. Just finished reading the manuals...</p> <p>I …