I saw some plasmid genomes as big as bacterial genome and vice versa. I am wondering if there is any straight forward way to distinguish plasmid and bacterial genome. I know about the toxin and antibiotic resistant genes present in plasmids.
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Pappu
3 answers
Oh. I downloaded it before from http://csbl.bmb.uga.edu/~ffzhou/cBar/cBar.1.2.tar.gz which is now also broken. Looks like yet another piece of Bioinformatics software just died...
Did anyone get cBar to work recently? I have downloaded it from the author's site http://csbl.bmb.uga.edu/~ffzhou/cBar/ and managed to compile it, but get no response when trying to execute it. I have bioperl and Weka installed, so that should not be a problem.
If not cBar, is there any other program out there that was designed to identify plasmid sequence?
Have you tried plasmidSPAdes?. It is other alternative.
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