When I run below command to subset the SNPs on a very wide range on chromosome 1, I get "Could not place marker for left …

I was trying to determine the relationship of some samples in my vcf file, but I have only few thousand SNPs. Can someone please tell …

<p>Hi All,</p> <p>When I perform logistic regression on my data using PLINK, <strong>some SNPs </strong>(not all SNPs) have NA in OR,SE,L95,U95,STAT and P columns</p> <p>What …

<p>Hi everyone, I have 10bacterial genome(reads + asselble file) and i wolud like to find core genome SNP among all those genome. Can anyone suggest …

<p>Hi everyone:</p> <p>I wanted to know If any of you had any experience using any software program that can give effective population size estimates based …

<p>Hi:</p> <p>This is a general question. </p> <p>I wanted to what software programs are currently available for estimating admixture dates using genome-wide SNP data?</p> <p>I …

<p>Hi everyone:</p> <p>I am using the software ALDER to estimate admixture dates using genome-wide data (SNPs). I have seen that in most articles instead of …

<p>Hi everyone:</p> <p>I've been working with a genome-wide data set and want to do a LD decay plot. I've read that lot of authors use …

<p>Hi everyone:</p> <p>I am working with genome wide data (SNPs) using plink and want to plot and LD decay graph (something like this <a href='http://postimg.org/image/5bkdju6jx/'>http://postimg.org/image/5bkdju6jx/</a>)</p> …

<p>Hi everyone:</p> <p>I am trying to plot the linkage disequilibrium decay across the genome using genome-wide snps and get a plot that looks something like …