Modeling H-Exchange Rate In Proteins

I was wondering if there is any simulation package to estimate H-chemical exchange rate in proteins (amide and side chains) depending on the sequence, structure, pH, etc.

Thank you in advance, Vitaliy

modeling

• 1,579 views • link

updated 12.5 years ago by Biostar

• written 12.8 years ago by vitaliy •

0 answers

No answers yet.

More posts like this

How does changes in pH change the conformation of a protein - Software
written 5.3 years ago by roybatty269 •

Hello everyone, As it is known, changes in pH change the attractions between the groups in the side chains of the protein. Acidification can, for …
How can I get the ATC codes of approved drugs in drugbank?
written 7.4 years ago by Ali Jam •

Dear All I am looking for the ATC codes of approved drugs in DrugBank. I was wondering if there is any way that I can …
Randomizing side chain orientation of a protein structure
written 10.4 years ago by ramachandranakash1994 •

Hello, I have the quaternary structures of hetero-dimeric proteins. I am trying to separate the 2 chains of each protein complex and dock them. Prior …
Randomizing side chain orientation of a protein structure
written 10.4 years ago by ramachandranakash1994 •

Hello, I have the quaternary structures of hetero-dimeric proteins. I am trying to separate the 2 chains of each protein complex and dock them. Prior …
Parse RNA structure from Kinefold to RNA VIenna Package (RNAfold)
written 11.7 years ago by Juan Cordero

Hi dear community, I am using Kinefold software from the command line to get the folding prediction for a RNA molecule. I need to parse …
Using Ldhat To Estimate Effective Population Size
written 12.5 years ago by GabrielMontenegro

Hi everyone: I am trying to use the LDhat package to estimate the population recombination rate of my samples (phased data based on genowide SNPs) …
List Of Sequence Unique Pdb Chains
written 14.9 years ago by Jonasr

Hi everyone, I need a list of which PDB chains are sequence-unique. For example. In PDB entry 2r9r there are 4 chains. But some have …
Supersecondary Structure Prediction
written 15.5 years ago by Jamand

Dear All, Do you know any tool to predict supersecondary structure in proteins? thank in advance.
Tools To Visualize Hydrogen Bondings Between Two Different Binding Proteins?
written 15.6 years ago by Lynn

I'm studying the interaction between two binding proteins (two chains) using Rasmol but it only shows the hydrogen bonds within the chain itself. Is …
Structural Bioinformatics Approaches To Fix Residues In Dis-Allowed Regions Of Ramachandran Plot
written 15.6 years ago by Khader Shameer

I am working on molecular dynamics simulation of a protein structure with approximately 1900 residues. In PDB, only c-alpha trace was available for this protein. …