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Mapping Applications On Hadoop Cluster

Hello,

I would like to know if there are any new mapping applications for paired end data designed to work on hadoop cluster. The mapping applications that i know are CloudBurst (single ended), Crossbow and DistMap.

PS: I dont have a background in Bioinformatics. I am an IT student working on Hadoop infrastructure to assess its performance for an organization.

Thanks

genome mapping paired-end
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updated by Chris Whelan Chris Whelan • written by bashwin.u • bashwin.u

1 answer

You could also look at SEAL:

http://biodoop-seal.sourceforge.net/

My structural variation detection too, Cloudburst, also has commands to parallelize mappings in Hadoop:

https://github.com/cwhelan/cloudbreak

• 107 views • link
written by Chris Whelan Chris Whelan

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