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Dataset Search: Rna-Seq And Affymetrix Hugene Arrays

I'm looking for a dataset with precisely the above platforms (i.e. not Affymetrix HuEx or any other array type).

I am already aware of the following three datasets: GTEx project; Gene expression propionic patients, carriers, and controls; Vitamin D and Gene Expression (a SuperSeries with two SubSeries on GEO)

Anyone know of any other?

Thanks!!!

PK

rnaseq affymetrix array
• 3,251 views • link
updated by Sean Davis Sean Davis • written by polarise polarise

1 answer

Does this work?

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL6244

There are 708 datasets, according to GEO, that use GPL6244, your requested array platform.

• 176 views • link
written by Sean Davis Sean Davis

You're right: GPL6244 is one of the platforms I requested. Thanks.

• 0 views • link
written by polarise polarise

After scouring this long list I've found a potential dataset. Thanks.

• 0 views • link
written by polarise polarise

If you need more powerful search capabilities and you know SQL, you can try the GEOmetadb Bioconductor package.

• 0 views • link
written by Sean Davis Sean Davis

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