What would the best way to compare over enriched GO terms from two different gene list? How would it be possible compare GO terms based on p-value distribution ?
Same problem here, I've got two lists of GO terms generated over the same sequencing dataset by different analyses and want to show their concordance. Most terms do not line up exactly, unless we account for the tree structure somehow.
Hi, I'm performing Gene Ontology (GO) enrichment analysis on differentially expressed genes (DEGs) from ATAC-seq data, using R (clusterProfiler). After separating my DEGs (DEseq2) into …
Hi, I would like to cluster/make PCA among microarray samples accross two different platforms.I am afraid that clustering on the common genes between the platforms …
I performed gene enrichment on a list of differentially expressed genes using Plant MetGenMap and have a long list of enriched GO terms. However, some …
<p>I am somewhat surprised by my GO enrichment analysis resuts. Is it possible that using gene sets with lower p-value threshold for differential gene expression, …
Same problem here, I've got two lists of GO terms generated over the same sequencing dataset by different analyses and want to show their concordance. Most terms do not line up exactly, unless we account for the tree structure somehow.