Predict Terminators

Is there software or an algorithm to predict the terminator region at the end of operons in a given genome? I am working on a prokaryotic genome and would like to find the coordinates of terminator regions.

Thanks.

transcription prediction

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updated 15.3 years ago by Neilfws

• written 15.3 years ago by Lee Katz

2 answers

Here is TransTermHP successor of TransTerm, if you are looking for rho-independent termination.

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written 15.3 years ago by Michael Dondrup

This is a good software package! I made a script to convert the output to GFF (why doesn't everyone include a GFF option nowadays?)

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written 15.3 years ago by Lee Katz

Algorithms to analyse terminators in Firmicutes are described in:

"Prediction of Transcriptional Terminators in Bacillus subtilis and Related Species"

Python script available "on request from the author."

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written 15.3 years ago by Neilfws

This guy hasn't gotten back to me yet but the script looks promising

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written 15.3 years ago by Lee Katz

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