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Ortholog Protein Finding Tool

what is the best way to find ortholog protein in other bacterial strains ?

protein
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updated by Angelina_G • Angelina_G • written by rezwan.02 • rezwan.02

you can use orthofinder, which is easy to run and produces many useful comparative genomics results as well as phylogenetic trees inculuding species tree and ortholog trees.

here is the link

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written by Mehmet Mehmet

3 answers

The best way to find orthologs is to read some posts that have already discussed a similar problem and do some reading.

A few of the posts on Biostars that discuss the same are:

What is the best method to find orthologous genes of a species?

Ortholog Detection tool

Finding the orthologs in the genome

• 114 views • link
written by Ashutosh Pandey Ashutosh Pandey

Simplest way is to do a bi directional blast !!

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written by always_learning always_learning

My group prepared a very nice tool based on KEGG ( see https://dariusz-izak-doktorat.github.io/ )

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written by szymon • szymon

When I pressed the link, I received 404-error - no requested file.

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written by natasha.sernova natasha.sernova

With all due respect, while this could be useful, that website is so messy and looks unprofessional, I would not invest effort in going through it. Strongly recommend a makeover if this is really a working solution.

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written by ATpoint ATpoint

Dear Sir! I tried to enter — I received 404-error — no requested file. Natasha Sernova

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written by natasha.sernova natasha.sernova

Is there a way I can retrieve gene name of another specie directly, rather than the hsa number?

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written by Angelina_G • Angelina_G

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