Can someone help me understand Kraken2 report output? I don't understand the different between the second column: Number of fragments covered by the clade rooted …

Dear Biostars community: I have been using Kraken extensively for the characterization of microbiomes. My colleague and I have a bit of a disagreement on …

Hi, all! I'm trying to measure the allele specific expression (ASE) levels of selected genes from RNA-seq data. My question is if it's OK to …

I am assigning COG categories to proteins of newly seqeunced bacterial genomes. To do that I am using COGNITOR in the [COGsoft][1]. I used the …

<p>what is the best way to find ortholog protein in other bacterial strains ?</p>

<p>I am new on COGnitor. I have tried with several sequences individually, but every time I've got the same result: "No Hits". and whenever I …

<p>i can't understand the terms "Conserved Neighborhood View" &amp; "Co-occurrence". what actually they mean and what are the use ?</p>

<p>Friends, I imputed a file containing 17 proteins in STRING database and found 10 more proteins having the probability to interact with those proteins. now …

<p>i have a complete genome of a strain of Streptococcus pneumoniae. now i have to find out the proteins related with pathogenicity or virulence ? …

<p>I need to remove repeated nucleotide sequence from the sequences I am working with. The sequences are in FASTA format. Can i do this by …