How To Get The Plot And Heatmap For The Nucleosome Pattern (Proximity) At +1500 And -1500 From Tss For A List Of Genes?
I have the .wig format file for the peaks generated by using the MACS14 for chip-seq reads of mouse genome and list of genes. For the list of genes I need to plot the proximity of nucleosome. anyone can suggest a script or tool to work on it.
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Ming Tommy Tang
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sigmagama8 •
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sigmagama8 •
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for nucleosome positioning, I guess you need the MNase-seq data. try ngsplot https://code.google.com/p/ngsplot/
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Ming Tommy Tang
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Can you please elaborate the question. Give example input and output if possible.