UCSC table broswer track for obtaining BED with ENSMUSG identifiers / E

Hello everyone!

I need to get a mouse genome reference for applying bedtools intersect to a set of ChIP-seq peaks. On the UCSC table browser, which tracks allow to get ENSMUSG identifiers? I was able to retrieve ENSMUST only.

genome

• 909 views • link

written 6.3 years ago by Eisuan •

0 answers

No answers yet.

More posts like this

No mouseOver effect in my track hub on UCSC genome browser
written 2.0 years ago by Pei

Hello! I generated a track hub to share my ChIP read coverage with my collaborator through UCSC genome browser. The tracks are in bigWig format …
bedtools intersect usage problem
written 5.5 years ago by ja4123 •

Hello! I need to filter peaks which are withwin gene regions. I have .bam file from CHIP-seq experiment and .bam file from RNA-seq. I am …
Visualize smooth ChIP peaks with Homer makeUCSCfile
written 9.1 years ago by varsha619

Hello, I am trying to use Homer makeUCSCfile for my ChIP seq data using as follows - makeUCSCfile sample.tagdir/ auto -style chipseq > sample.bedGraph.gz Although …
Uploading sequencing data from GEO to USCS Genome Browser
written 9.2 years ago by carly.harro •

Hello, I am trying to upload ChIP seq and S/MAR-seq data from GEO to my UCSC genome browser session; however, when I add it to …
How can I visualize multiple bed files by using IGB or UCSC genome browser for ChIP peak profiling?
written 9.4 years ago by AndyJian •

Hi: I have two bed files (ChIP-Seq peaks), and I want to visualize it by using IGB or UCSC genome browser. The point is, I …
Compare ChIP-seq data from various experiments
written 9.9 years ago by bharath.mh24 •

Hello All, I am interested to know if there is any way I could compare and visualize (IGV or UCSC genome browser) normalised ChIP seq …
Forum: High throughput sequencing (RNA-seq, Chip-seq, CAGE-seq) coverage tracks from multiple speci…
written 10.3 years ago by Chirag Nepal

**strong text**Hi there, I wanted to compile the list of URLs where processed sequencing data (RNA-seq, CAGE-seq, histone ChIP-seq and others) as available as custom …
Perl Program To Access Information From Ucsc
written 12.6 years ago by kranthiv1889 •

I have a set of SNP identifiers and I need to retrieve information from UCSC. I know I can use a table browser and choose …
Is It Possible To Retrieve Ensembl Annotation Track Files In A Non-Programmatical Way?
written 12.6 years ago by Anima Mundi

Hello everybody. From the mouse genome at Ensembl, I would like to be able to retrieve the annotation tracks (as .bed files) displayed by the …
Extracting Exon/Intergenic/Intron Region Of Human Genome
written 14.5 years ago by Dataminer

Hi! Is their a way (already available in form of tool) to obtain all sequences or regions in human (hg 18) or mouse genome belonging …