This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How To Get The Itgb1 Mrna Seq In Deuterostomia From Database

Put the ( txid33511[Organism:exp] ITGB1 ) into NCBI ,but it`s not work at all

mrna
• 1,672 views • link
updated by Pierre Lindenbaum Pierre Lindenbaum • written by harrymao20 • harrymao20

1 answer

Deuterostome is not a 'leaf' in the NCBI taxonomy. Sorry, AFAIK the NCBI doesn't do any reasoning on the tree of life: You'll have to specify an instance of this taxon like 9606(Homo sapiens)

http://www.ncbi.nlm.nih.gov/nuccore/?term=%22Homo+Sapiens%22[ORGN]+ITGB1

you can also loop over the children of "Deuterostome" e.g: How to retrieve all sequences, from NCBI, that belong to a specific txid AND its sub txids? PostgreSQL: Select only taxa which are children of a given taxon using parent taxon ID

• 0 views • link
written by Pierre Lindenbaum Pierre Lindenbaum

Log in to answer this question.

More posts like this