This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Ucsc Genome Browser Table For Gene Symbol To Coordinate Map?

When I visit the UCSC Genome Browser, click on the browser link and type in, for instance, HBB to pull up human beta hemoglobin, what are the underlying tables that store the mapping of such symbols to genomic coordinates?

ucsc map gene coordinates
• 4,085 views • link
written by Alex Reynolds Alex Reynolds

1 answer

I use: 

kgXref.geneSymbol and knownGene.chrom/txStart/txEnd

with

hg19.knowGene.name=hg19.kgXref.kgID
• 32 views • link
written by Pierre Lindenbaum Pierre Lindenbaum

Log in to answer this question.

More posts like this