Bio Sequtils, Protparam Useage Inquiry
I'm trying to use the ProtParamData module, but am receiving: AttributeError: 'Seq' object has no attribute 'islower' in reference to this function of the class Protein Analysis
def __init__(self, ProtSequence):
if ProtSequence.islower():
self.sequence = Seq(ProtSequence.upper(), IUPAC.protein)
else:
self.sequence = Seq(ProtSequence, IUPAC.protein)
How can I use this module/bypass this error? Thanks
1 answer
An example of the usage of the ProteinAnalysis class can be found in the documentation for the Bio.SeqUtils.ProtParam module: http://biopython.org/DIST/docs/api/Bio.SeqUtils.ProtParam-module.html
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The ProteinAnalysis class takes a string as an argument, instead of a Seq object. If you post your usage, we may be able to offer additional suggestions.
Although it may make sense to allow for a Seq object as well...