Cgat Tools Install Error

Question

[liupfskygre]

Dear all, I am trying to install cgat tool. Following the instruction,

https://github.com/CGATOxford/cgat/

pip install cgat

or download and install by

sudo python setup.py install

I am always get the error:

File "/home/liupf/build/cgat/setup.py", line 233, in <module>
    include_dirs = [ numpy.get_include() ] + pysam.get_include()
AttributeError: 'module' object has no attribute 'get_include'
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File "<string>", line 14, in <module>
File "/home/liupf/build/cgat/setup.py", line 233, in <module>
include_dirs = [ numpy.get_include() ] + pysam.get_include()
AttributeError: 'module' object has no attribute 'get_include'

Please help me figuring out how to fix it!

Thank you very much!

[Alastair Kerr]

I am having a similar problem with other packages as well. I am guessing it might be due to the order in which some packages have been installed. If you have figured it out please post an update. thanks.