Predicting Rna / Dna Binding Site In Proteins

Hi,

What kind of software do you use in order to predict RNA / DNA binding sites? I know I can google it, however I would love to hear feedback regarding precision etc.

So far I've found BindN and I know methods used in Genesilico MetaServer. What else do you use?

Cheers!

protein dna rna binding interaction

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updated 13.2 years ago by Noam N. Kremen •

• written 13.2 years ago by Mateusz

1 answer

PFP attempts to predict via electrostatics. Paper is here.

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written 13.2 years ago by Noam N. Kremen •

Thanks, I will give it a try! Unfortunately in this case I have only sequence, not a structure.

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written 13.2 years ago by Mateusz

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