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Finding Similarities In Predicted Enhancers Of Different Genes

Hi all,

I have predicted enhancers for 6 genes. I want to compare these enhancers with each other to find a subset out of all these which are similar to each other in terms of the motifs that they have. All I find are methods that do a pairwise comparison (such as D2z) between enhancers but I don't find that informative as I want enhancers which are similar from all 6 genes. Does any one know any methods that can accomplish that? or is it possible to extract from pairwise output such as D2z the enhancers from 6 genes that are all similar to each other?

Thanks!!!

enhancer
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updated by Ram Ram • written by Diana Diana

1 answer

You may useful tools for extracting motiffs which are similar for all of the 6 sequences. YMF 3.0

STAMP

MOST

Hope this will help you.

• 66 views • link
written by aravind ramesh aravind ramesh

Thanks a lot aravind!

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written by Diana Diana

You can consider to Upvote, if my answer was useful to you.

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written by aravind ramesh aravind ramesh

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