Pfge Prediction Based On Wgs

Hi, is there any software or algorithm out there right now that reads a complete genome assembly and predicts a PFGE type? If yes, does it take into account the methylome too (ie what the enzyme cuts vs ignores)? Thank you.

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written 13.5 years ago by Lee Katz

1 answer

I was looking for this answer yet again but didn't see anything yet again, curiously. Here is the script I've developed over time for anyone else who might be looking.

https://github.com/lskatz/lskScripts/blob/master/pfgeOnGenome.pl

Run with --help for usage.

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written 10.1 years ago by Lee Katz

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