Where Are The Genes In This Geo? How Do I See Them In R?
Hi,
Sorry for asking so many how-tos here, but I really want to move forward in using this data.
Is the accession number here referencing a Gene? http://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE43497
How do I get from that to the gene name?
Also, what is the IDREF? It seems like it is just a run of affymetrix. This dataset should have 14 subjects * 4 time points * 2 (ctrl. vs. treatment), which is 112, but it has 190 IDREFs.
Also, when I load the dataset into r like below, how do I query a gene (column)?
library(GEOquery)
gset <- getGEO("GSE43497", GSEMatrix =TRUE)
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shane.neeley •
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If you are using GEO2R at the GEO website, you may be generating dynamic results which will not exist for other people when we follow the link. So it is not clear what you mean by "accession number." Can you post some examples of accession numbers that you are seeing?
Sorry. Click on the "top250" button and you will see
No, I will not see. As I said, your link takes us to a fresh instance of GEO2R, without any results.