Hello,

I would like to automate the following process that uses GEO2R to analyze gene expression. For each contig I provide, this is the workflow I follow:

1. browse to https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE36545
2. click Profile Graph
3. Enter ID: assembledIsotigs_Contig9526
4. click Set
5. click Sample Values
6. copy results from pop-up window:

Instead of going through the above workflow for each contig, is it possible to automate the process using something like the getGEO() function from Bioconductor?

Thanks!