Which Database To Use For Searching Rna-Seq Reads?
Hi All, I have some RNA-Seq reads and I was wondering which version of blast should I use to search it? e.g. is it tblastx or is there some other database or algorithm to use?? thanks
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1 answer
None, in general you don't need or want blast for RNAseq analysis -> http://bit.ly/YlbYFz
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What are you looking for, exactly?
I mean -- are you looking for enrichment of motif/kmers in your reads or something?