How would you feel about a code golf? Give us your pretiest, shortest, quickest pieces of code! Especially languages that nobody else has posted are …

I would like to get the sequence of specific regions in the genome (specified by a bed file- 'heterochromatin_mm9.bed'). Unfortunately when I go to golden …

<p>I want to compare two lncRNA annotations: </p> <p><a href='http://genomebiology.com/2012/13/11/R107'>D. Kelley et al., 2012</a> and <a href='http://genesdev.cshlp.org/content/early/2011/09/02/gad.17446611.abstract'>Cabili et al., 2011</a></p> <pre><code>curl -s "http://genomebiology.com/content/supplementary/gb-2012-13-11-r107-s7.gtf" &gt; lncRNA_Kelley.gtf …

<p>I want to find genomic regions conserved between species. Therefore I downloaded the mm9rn4 net file from UCSC, as I was adviced by my professor. …

<p>Hi,</p> <p>I have a couple of questions about the chr1.fa FASTA file at the link below:</p> <p>Q1) Why does the beginning of the file have …

<p>I have the refgene regions of the rattus norvegicus chromosomes, given by the indexes of the start and end positions.</p> <p>I also have the chromosomes …

<p>I want to download the <em>rattus norvegicus</em> annotation database so that my program can do lookups quickly and often without pestering the UCSC MySQL server. …

I have downloaded the Rattus Norvegicus genome, which I will be analyzing. Building an index for it is not too hard, but is it possible …

<p>Does anyone know of a tool or package (perl/python/R) that will calculate the GC content of every coding sequence in the genome?</p> <p>I need to …

<p>Can anyone explain why these two chromosome 1 files are different (that to others as well)? I'm under the impression hg19 and GRC37 are the …