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Snp Analysis In Ref Sequence

Dear Friends,

I ve found out the SNPs which are resposible for causing the disease. Now i ve to check whether these SNPs(which i ve found out through literature search) is present in my sequence or not.

for eg: rs6094752 is one of the SNP in the gene NCOA3 causing Breast cancer(which i ve found out through literature search)

and i have a reference sequence of human NM_001174087.

now i have to check whether rs6094752 is present in NM_001174087 or not? this is my question. How can i find it

snp analysis sequence
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updated by Pierre Lindenbaum Pierre Lindenbaum • written by Elena Elena

1 answer

Am I missing something ?

you'll find this information by just looking at the page for rs6094752 ( protein)

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written by Pierre Lindenbaum Pierre Lindenbaum

Ya sir i ve got it. Thanku

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written by Cynthia • Cynthia

Thanku Pierre. I ve got another doubt, if the same SNP i need to find in other organism?

like rs6094752 in XR_024896.1(Pan troglodytes)?

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written by Cynthia • Cynthia

Thankyou Pierre for clearing my silly doubt. got one more doubt if i need to find out the same SNP i.e. rs6094752 in other primates like in XR_024896.1( Pan troglodytes)

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written by Elena Elena

I've checked the SNP in that particular reference sequence. for eg: rs6094752 in NM_001174087. and the result is NM_001174087.1:c.652C>T, but when i saw the residue number in the reference sequence, according to the result the residue should be T, but instead of T, G is present. How can I interpret the result? Kindly help

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updated by Ram Ram • written by Elena Elena

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