<p>I want to process the <a href='http://samtools.sourceforge.net/SAM1.pdf'>sam</a> file created by <a href='http://bio-bwa.sourceforge.net/'>BWA</a>, if it is sorted by the sequence coordinate on reference, it will be …
<p>I use picard tools to take a <a href='http://bio-bwa.sourceforge.net/'>BWA</a> alignment <a href='http://samtools.sourceforge.net/SAM1.pdf'>sam</a> file and convert it into a sorted <a href='http://samtools.sourceforge.net/SAM1.pdf'>bam</a> file. Normally this works …
<p>Hi,</p> <p>Having two <a href='http://samtools.sourceforge.net/SAM1.pdf'>BAM</a> files from NGS data, how can one check if they are the <a href='http://samtools.sourceforge.net/SAM1.pdf'>BAM</a> files (left and right) from a …
<p>I am trying to convert my <a href='http://samtools.sourceforge.net/SAM1.pdf'>sam</a> file into bed file in such a way that i will keep some information from the <a …
<p>hello every one,</p> <p>after mapping,i encountered an error during converting my <a href='http://samtools.sourceforge.net/SAM1.pdf'>sam</a> out file into <a href='http://samtools.sourceforge.net/SAM1.pdf'>bam</a> out put file.</p> <p>[cdac@nbri <a href='http://samtools.sourceforge.net/'>samtools</a>-0.1.19]$ <a …
<p>Hi there</p> <p>Does anyone know how I can pull just one read from a <a href='http://samtools.sourceforge.net/SAM1.pdf'>BAM</a> file, when I know the read-id (and sequence) of …
<p>Hello,</p> <p>I had some data in "eland_export.txt" format and I want to convert it to the <a href='http://samtools.sourceforge.net/SAM1.pdf'>SAM</a> format first and then later to the …
<p>I converted the output of soap2 which is map file to <a href='http://samtools.sourceforge.net/SAM1.pdf'>sam</a> file using map2sam.pl and then converted this <a href='http://samtools.sourceforge.net/SAM1.pdf'>sam</a> to <a href='http://samtools.sourceforge.net/SAM1.pdf'>bam</a> …
<p>Hi,</p> <p>Is it possible to convert a fasta file to <a href='http://samtools.sourceforge.net/SAM1.pdf'>sam</a>/bam format using galaxy OR <a href='http://samtools.sourceforge.net/SAM1.pdf'>Sam</a> tools in MAC ? </p> <p>And how …