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bede.portz
bede.portz
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550
Joined:
12.9 years ago
Last seen:
10.6 years ago
Location:
United States

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Latest posts by user
1 vote
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Answer: A: Are HOMER aggregate proflles normalized to the read depth of each ChIP-seq sampl
updated by Ram Ram • written by bede.portz bede.portz
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1 reply
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Comment: C: Plot of intergenomic distances between all bound TF sites?
updated by Ram Ram • written by bede.portz bede.portz
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4 replies
2.8K views
Plot of intergenomic distances between all bound TF sites?
chip-seq peaks
updated by Ram Ram • written by bede.portz bede.portz
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Comment: Comment: why only small fraction of reads from control sample of chip-seq are mapping int
updated by Ram Ram • written by bede.portz bede.portz
4 votes
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Answer: Answer: what is the motivation behind Pol2 chip-seq data?
updated by Ram Ram • written by bede.portz bede.portz
1 vote
0 replies
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Answer: Answer: Clearly formed IgG Peaks in CLIP-Seq
updated by Ram Ram • written by bede.portz bede.portz
1 vote
0 replies
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Answer: Answer: A new perspective needed for a newbie
updated by Ram Ram • written by bede.portz bede.portz
0 votes
1 reply
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Answer: Answer: Query related to generating plots from HOMER output
updated by Ram Ram • written by bede.portz bede.portz
2 votes
0 replies
1 view
Answer: Answer: upscaling ChIP-seq data
updated by Ram Ram • written by bede.portz bede.portz
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Comment: C: How to avoid problem using -size, -hist and -ghist for annotatePeaks.pl in HOMER
written by bede.portz bede.portz
0 votes
1 reply
2.6K views
How to transform Peakzilla output to one that can be displayed in the UCSC Browser
ucsc calling peakzilla chip-seq browser peak
updated by Ram Ram • written by bede.portz bede.portz
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1 reply
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Comment: Comment: chip-seq low signal vs background
updated by Ram Ram • written by bede.portz bede.portz
1 vote
1 reply
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Answer: Answer: chip-seq low signal vs background
updated by Ram Ram • written by bede.portz bede.portz
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Answer: A: How To Find Upstream/Downstream Bound Features With A Chip-Seq Analysis In Galax
written by bede.portz bede.portz
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1 reply
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Comment: C: Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
updated by Ram Ram • written by bede.portz bede.portz
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Comment: C: Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
written by bede.portz bede.portz
5 votes
8 replies
19K views
Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
sam sra chip-seq samtools
updated by Biostar Biostar • written by bede.portz bede.portz
3 votes
0 replies
114 views
Answer: A: Does Transcription Factor Can Also Repress The Expression Of Genes
written by bede.portz bede.portz
3 votes
4 replies
10K views
How Do I Search A Genome For A Known Motif, And Get An Interval File Of All Instances Of The Motif?
motif chip-seq
updated by Ming Tommy Tang Ming Tommy Tang • written by bede.portz bede.portz
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Comment: C: Double Peaks For Both Forward And Reverse Tags In Macs2 Model Of Chip-Seq Data -
written by bede.portz bede.portz
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