annotatePeaks.pl <peak file> <genome> -size <#> -hist <#> -ghist -d <tag directory 1> [tag directory2] ... > <output matrix file>

After using annotatePeaks.pl with -size, -hist and -ghist to be able to create heatmaps later, in error file I got:

-size not found in /software/UHTS/Analysis/homer/4.6//.//config.txt
    To check if is available, run "perl /software/UHTS/Analysis/homer/4.6//.//configureHomer.pl -list"
    If so, add it by typing "perl /software/UHTS/Analysis/homer/4.6//.//configureHomer.pl -install -size"

Even after following there instructions I couldn't use the part that I put in bold, and I got the same message in error file.

What should I do to be able to run this and not to have any kind of problem?

Thanks in advance!