Hey,
I found such a text:
2.1 Training dataset
The training dataset contains data from ePSORTdb 2.0 (Rey et al., 2005b), which was used to build PSORTb 2.0, Swiss-Prot version 49 (Wu et al., 2006), plus protein localization data obtained from manual literature search (the latter comprises 30% of the dataset).
http://bioinformatics.oxfordjournals.org/content/26/13/1608.long#sec-2
If you take a look at the release history, the last release was 44. http://www.uniprot.org/news/release-notes
I have to found the date when this "magick" release was created to get all proteins after that date. I do analysis and I don't want to have unique proteins (it means the entries that are created after release 49.
Do you know how to get such date? Date of release 49?
•
written
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Marcinmagnus •
2 answers
OK, I found it:
http://expasy.org/txt/old-rel/relnotes.49.htm
It was tricky :|
Release 7.0 of the UniProt Knowledgebase is composed of the UniProtKB/Swiss-Prot Protein Knowledgebase release 49.0 and the UniProtKB/TrEMBL Protein Database release 32.0.
I'm sorry I don't know if I should ask to my question. I hope it will be useful for anybody in the future.
•
written
by
Marcinmagnus •
Using the search function in the news section of uniprot.org you can also find it. which gives http://www.uniprot.org/news/2006/02/07/release as the url for the release note.
To find swiss-prot entries added since then use the query builder to select reviewed:true and date-integrated put 2006-02-07 in the from field and CURRENT in to to field. Which will give as query 2006-02-07
http://www.uniprot.org/uniprot/?query=reviewed:yes+AND+created:[20060207+TO+current]&sort=score
Which are the newly added entries since the 7th of february 2006.
It does not tell you which entries were deleted since that day.
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OK, I found it:
http://expasy.org/txt/old-rel/relnotes.49.htm
It was tricky :|
"Release 7.0 of the UniProt Knowledgebase is composed of the UniProtKB/Swiss-Prot Protein Knowledgebase release 49.0 and the UniProtKB/TrEMBL Protein Database release 32.0."