How Do I Make Blast Profiles? Examples Shown

Hi,

I was wondering if you know what commands to use on the blast command line tool, or what program to download to generate psi-blast profiles like the ones below:

http://www.cbs.dtu.dk/biotools/Blast2logo-1.1/blastprofile.html

http://sparks.informatics.iupui.edu/SPINE-X/eg.pssm

blast ncbi protein

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updated 11.3 years ago by Biostar

• written 13.8 years ago by shane.neeley •

Well now I know to use blastpgp to make the profiles.

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written 13.8 years ago by shane.neeley •

Have you tried reading the output of "blastpgp -help" then or "man blastpgp"?

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written 13.8 years ago by Michael Schubert

0 answers

No answers yet.

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