Are Bowtie And Tophat Available By Default In Galaxy?
Someone told me to integrate Bowtie and Tophat into the Galaxy but I found they are already available in the Galaxy by default. So, Bowtie and Tophat are available in Galaxy by default, rite?
• 2,610 views
•
link
updated
by
Istvan Albert
•
written
by
Sam ad •
•
written
by
Sam ad •
1 answer
Short read mapper that have interfaces by default:
https://bitbucket.org/galaxy/galaxy-dist/src/da9d740fce31/tools/sr_mapping
RNA-Seq tools that are available by default:
https://bitbucket.org/galaxy/galaxy-dist/src/da9d740fce31/tools/ngs_rna
• 1 views
•
link
written
by
Istvan Albert
Log in to answer this question.
More posts like this
-
ChIPSeq Analysis on GEO Fastq data on Galaxy
written by mjdm •
-
tophat alignment error
written by hariompraju •
-
Local Galaxy: Need help with HISAT index builder
written by thefirstrealace •
-
Problem when having multiple Tophat runs inside one workflow in Galaxy
written by tunl
-
TopHat with older versions of Bowtie
written by sarahmanderni
-
Forum: Hard-Coded Bowtie2 Parameter '--B2-L' In Tophat
written by hliang
-
Tophat: Option --Bowtie Not A Unique Prefix
written by newDNASeqer
-
How To Integrate Tools: Bismark, Fastqc, Fastq Tools, Fastx, Trim Galore?
written by Sam ad •
-
Tophat Installation On Ubuntu 11.10 Server
written by U
-
Seq Qc/Trimming Code Preferences?
written by Holly •
