Seq Qc/Trimming Code Preferences?
Does anyone have any preferences that they might like to share regarding QC/Trimming tools for RNAseq? I have been testing FASTX, FASTQC and Prinseq. I like Prinseq the best so far, and also know there is alot available on bioconductor. I need sometihing that will feed into Bowtie/Tophat. Opinions? thanks, holly
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RNA-SeQC is a new Broad tool to do visual QC for RNA-seq data.
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