Visualizing Genes On A Chromosome According To Their Position
Hi all, i have 700 genes of drosophila and i want to show them all on the chromosome according to there position on linear scale. i want a visualisation same as NCBI sequence viewer.But i want to show only my 700 genes..can anybody suggest me any tool or utility??
Thanks in advance.
2 answers
Have a look at the geneplotter, ggbio, or Gviz packages for bioconductor.
• 87 views
•
link
written
by
Sean Davis
I think it could be relatively quick to do that in WebGBrowse. http://gmod.org/wiki/WebGBrowse
Log in to answer this question.
More posts like this
-
Obtaining Gene Expression patterns via Kmeans - clustering sample means or linear models?
written by ponganta
-
How to extract upstream and downstream sequence of a set of genes using python
written by t.reza •
-
scan DNA sequence for known motifs
written by 2nelly
-
multiple genome sequence alignment tools
written by rajesh
-
HG18 coordinates of rs#
written by win
-
Graphic tools to depict genes along a chromosome
written by hpapoli
-
How To Obtain The Ancestral Repeats For Drosophila
written by EvoGen •
-
How To Show Gene-Gene Interactions On Linear Scale
written by ancient_learner
-
Visualisation
written by Mandar •
-
Create Chromosome Wide Distribution Map
written by Nitin
