This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Compile Tabix Under Cygwin

Hi all, I downloaded the tabix source files from SourceForge but wasnt able to get it to compile under cygwin. does anyone how to start the compilation process under cygwin?

thanks. a

tabix

please post the error that you are getting - otherwise the answer simply is type make

1 answer

If you want to build programs you'll need gcc, binutils, make and probably other packages from the ``Devel'' category. The best approach is to just install 'All' from the cygwin installation script. It is somewhat counterintuitive. Keep clicking the top button until it says 'All'. Then all you need is to unpack the archive and type:

make

I have the same issue and I tried to follow your advice and decided to install 'All' from cygwin installation script. I wanted to confirm if installation of all packages takes forever. I have been running the installation for almost 10 hours now and it has installed just ~10% of the total packages. Am I doing something wrong?

well they may have added more packages to the all package since I've tried it last.

It should not take 10 hours.

Perhaps it is best to modify this answer install the default and go back and add these individually.

Log in to answer this question.