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Alleles tested by probes 23me chip

I downloaded a dataset from 23me and I wanted to know the alleles that each of the 23me probe tests for on their latest chip. Does anyone know when I could get this information or if someone has already collated this information.

Thanks in advance.

23me
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updated by Ram Ram • written by win win

Did you try simply logging on the 23andme account, clicking on your name on the top right corner, and then on "Browser Raw Data"?

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written by Giovanni M Dall'Olio Giovanni M Dall'Olio

Yes, I have downloaded the file but the file only lists SNP, chromosome, position and genotype. It does not state which alleles are being tested.

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written by win win

1 answer

You can convert the 23andme data file to vcf, this will use a reference genome and next to your genotype also display the reference allele on that location in the vcf. Is this what you are looking for?

https://github.com/arrogantrobot/23andme2vcf

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updated by Ram Ram • written by William William

Yes, somewhat. I am thinking of use cases when one probe detected genotype is AA and other probe detected genotype is GG and both probe for the same genomic location. In this case the script you sent, would it create two entries in the VCF or would it miss one?

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written by win win

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