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Tutorial: Genotype And Snp Calling Review Papers

Review papers on the topic of genoype and snp calling.

DNA sequencing

Bisulfite sequencing

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snp
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updated by Ram Ram • written by Istvan Albert Istvan Albert

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Pacific biosciences sequencing technology for genotyping and variation discovery in human data, Mauricio O Carneiro, Carsten Russ, Michael G Ross, Stacey Gabriel, Chad Nusbaum and Mark A DePristo, BMC Genomics 2012, 13:375

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written by NextGenSeek • NextGenSeek

Sequencing 200 individual Drosophila. Identified SNPs, indels and CNVs up to 100Kb. Data, code, qc graphs, summaries and logs are released:

Gilks WP, Pennell TM, Flis I et al. Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample. F1000Research 2016, 5:2644 (doi: 10.12688/f1000research.9912.3)

Flow diagram of NGS analysis

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written by willgilks willgilks

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