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Dog Canfam3 Dbsnp File

Please do direct me to most recent Dog dbSNP file, preferably in VCF format, with CanFam3 coordinates.

Thanks in advance

One I could see in Ensembl: ftp://ftp.ensembl.org/pub/release-68/variation/gvf/canis_familiaris/Canis_familiaris.gvf.gz

dbsnp

1 answer

You can create your own very easily doing of lift-over with UCSC Genome Browser on the known SNPs canFam2 SNPs to canFam3.1.

Broad Canine SNPs

UCSC LiftOver

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