how can I use VCF file SNP annotation? · Biostar

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how can I use VCF file SNP annotation?

Hi all,

I study about CNV in equus caballus. I need to make pfb file based on ecab3.0, I am looking forward to find latest SNP annotation and find VCF file in ftp://ftp.ensembl.org/pub/release-98/variation/vcf/equus_caballus/.

I am confused for that which file may have SNP annotation. I searched to familiar with VCF file format (I am new in using VCF file) and find a PDF file here https://www.internationalgenome.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41/ but I am still confused, any help or tutorial will be appreciated.

cnv snp vcf

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updated 3.4 years ago by Ram

• written 6.6 years ago by mary

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