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multiis not the command for multiqc. It'smultiqc. Do you have any aliases in place?sorry that was a typo on there, I entered the command correctly when using multiQC. but I didn't get the heatmap of the status checks as I expected
Did you get any output at all? What did the command line say?
What is FastQC status check?
"Status Checks
Status for each FastQC section showing whether results seem entirely normal (green), slightly abnormal (orange) or very unusual (red)."
How did you install MultiQC? Using
conda? Sounds like you may be missing some libraries or something.yes I installed via Conda
Do you have all
.zipfiles from FastQC in same dir? FastQC module looks for files that end in_fastqc.zip.