I am studying clusters of ortholog genes of four algae species. I created 10'000 clusters, and I have one single GO term describing each one of them. I have selected 2'000 clusters that I am interested in, and I want to know how their GO terms are associated. Therefore, I only have as input a list of 2'000 GO terms and I would like to have as output something like a hierarchical map or summary. Is there any software that I can use to analyze those GO terms?
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As an updaate:
I have found REViGO
It is a web based software that "can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms."
From that point, my list of GO terms was greatly shortened, making it possible to be manually analyzed.
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