How to check beagle imputation accuracy? · Biostar

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How to check beagle imputation accuracy?

Dear experts, I have imputed my genotype data in beagle, without a reference panel, because there is no reference panel for my dataset. How to check whether the imputation is right or wrong. Also check my command, I used the following command.
java -Xmx32g -jar beagle.18May20.d20.jar gt=genome.vcf out=imputedgenome

r snp sequencing

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written 5.5 years ago by Abbas.M •

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